Big Data Governance for Multi-Omics Data Sharing: A Blockchain, Smart Contract, and Off-Chain Storage Framework

DOI:

https://doi.org/10.63646/VEMR4744

Keywords:

Multi-omics data; blockchain governance; smart contracts; off-chain storage; zero-knowledge proofs; data interoperability

Abstract

Modern bioinformatics has entered a multi-omics era in which genomic, transcriptomic, proteomic, and metabolomic datasets accumulate at unprecedented velocity, volume, and variety. Conventional centralized governance — institutional databases protected by role-based access control — struggles with single points of failure, opaque consent enforcement, weak provenance, and brittle interoperability across jurisdictions. Blockchain technology has been proposed as an alternative substrate for trustworthy multi-omics data sharing, but the literature remains fragmented across isolated mechanisms (immutability, smart contracts, on-chain storage) without a coherent system view. This article systematically reviews 82 peer-reviewed studies published between 2017 and 2025, indexed in Scopus, IEEE Xplore, ScienceDirect, SpringerLink, and the ACM Digital Library, using a five-stage screening protocol and a five-question quality assessment rubric. Building on the synthesis, we propose a six-layer architectural framework that combines a permissioned blockchain ledger, smart-contract-based consent and access control, privacy-preserving cryptography (zero-knowledge proofs, homomorphic encryption, differential privacy), decentralized identity, off-chain storage on the InterPlanetary File System, and native interoperability with HL7 FHIR-compliant electronic health records. A multi-criterion comparison shows that Practical Byzantine Fault Tolerance is best suited to the latency, throughput, and energy constraints of multi-omics workflows, outperforming Proof-of-Work and Proof-of-Stake on five of six evaluation dimensions. Compared with traditional security baselines, blockchain delivers measurable advantages in tamper-resistance, provenance, and patient-centric consent, but does not universally dominate on confidentiality and scalability. The framework offers a practical roadmap for big-data governance in life-science research while highlighting open problems in standardization, regulatory alignment, and energy efficiency.

How to Cite

Wang, H., & Xu, X. (2026). Big Data Governance for Multi-Omics Data Sharing: A Blockchain, Smart Contract, and Off-Chain Storage Framework. Data Science & Big Data Technology, 4(2), 29-51. https://doi.org/10.63646/VEMR4744

References

Aitken, M., de St Jorre, J., Pagliari, C., Jepson, R., & Cunningham-Burley, S. (2016). Public responses to the sharing and linkage of health data for research purposes: A systematic review. BMC Medical Ethics, 17(1), 73. https://doi.org/10.1186/s12910-016-0153-x

Androulaki, E., Barger, A., Bortnikov, V., Cachin, C., Christidis, K., De Caro, A., Enyeart, D., Ferris, C., Laventman, G., Manevich, Y., Muralidharan, S., Murthy, C., Nguyen, B., Sethi, M., Singh, G., Smith, K., Sorniotti, A., Stathakopoulou, C., Vukolić, M., … Yellick, J. (2018). Hyperledger Fabric: A distributed operating system for permissioned blockchains. Proceedings of the Thirteenth EuroSys Conference, 1–15. https://doi.org/10.1145/3190508.3190538

Azaria, A., Ekblaw, A., Vieira, T., & Lippman, A. (2016). MedRec: Using blockchain for medical data access and permission management. 2016 2nd International Conference on Open and Big Data (OBD), 25–30. https://doi.org/10.1109/OBD.2016.11

Berdik, D., Otoum, S., Schmidt, N., Porter, D., & Jararweh, Y. (2021). A survey on blockchain for information systems management and security. Information Processing & Management, 58(1), 102397. https://doi.org/10.1016/j.ipm.2020.102397

Bhushan, B., Sinha, P., Sagayam, K. M., & Andrew, J. (2021). Untangling blockchain technology: A survey on state of the art, security threats, privacy services, applications and future research directions. Computers & Electrical Engineering, 90, 106897. https://doi.org/10.1016/j.compeleceng.2020.106897

Bin Saif, M., Migliorini, S., & Spoto, F. (2024). Efficient and secure distributed data storage and retrieval using InterPlanetary File System and blockchain. Future Internet, 16(3), 98. https://doi.org/10.3390/fi16030098

Carlini, F., Carlini, R., Dalla Palma, S., Pareschi, R., & Zappone, F. (2020). The Genesy model for a blockchain-based fair ecosystem of genomic data. Frontiers in Blockchain, 3, 483227. https://doi.org/10.3389/fbloc.2020.483227

Casino, F., Dasaklis, T. K., & Patsakis, C. (2019). A systematic literature review of blockchain-based applications: Current status, classification and open issues. Telematics and Informatics, 36, 55–81. https://doi.org/10.1016/j.tele.2018.11.006

Christidis, K., & Devetsikiotis, M. (2016). Blockchains and smart contracts for the Internet of Things. IEEE Access, 4, 2292–2303. https://doi.org/10.1109/ACCESS.2016.2566339

Dagher, G. G., Mohler, J., Milojkovic, M., & Marella, P. B. (2018). Ancile: Privacy-preserving framework for access control and interoperability of electronic health records using blockchain technology. Sustainable Cities and Society, 39, 283–297. https://doi.org/10.1016/j.scs.2018.02.014

De Aguiar, E. J., Faiçal, B. S., Krishnamachari, B., & Ueyama, J. (2020). A survey of blockchain-based strategies for healthcare. ACM Computing Surveys, 53(2), Article 27. https://doi.org/10.1145/3376915

Dubovitskaya, A., Baig, F., Xu, Z., Shukla, R., Zambani, P. S., Swaminathan, A., Jahangir, M. M., Chowdhry, K., Lachhani, R., Idnani, N., Schumacher, M., Aberer, K., Stoller, S. D., Ryu, S., & Wang, F. (2020). ACTION-EHR: Patient-centric blockchain-based electronic health record data management for cancer care. Journal of Medical Internet Research, 22(8), e13598. https://doi.org/10.2196/13598

Esposito, C., De Santis, A., Tortora, G., Chang, H., & Choo, K.-K. R. (2018). Blockchain: A panacea for healthcare cloud-based data security and privacy? IEEE Cloud Computing, 5(1), 31–37. https://doi.org/10.1109/MCC.2018.011791712

Fan, K., Wang, S., Ren, Y., Li, H., & Yang, Y. (2018). MedBlock: Efficient and secure medical data sharing via blockchain. Journal of Medical Systems, 42(8), 136. https://doi.org/10.1007/s10916-018-0993-7

Gordon, W. J., & Catalini, C. (2018). Blockchain technology for healthcare: Facilitating the transition to patient-driven interoperability. Computational and Structural Biotechnology Journal, 16, 224–230. https://doi.org/10.1016/j.csbj.2018.06.003

Griggs, K. N., Ossipova, O., Kohlios, C. P., Baccarini, A. N., Howson, E. A., & Hayajneh, T. (2018). Healthcare blockchain system using smart contracts for secure automated remote patient monitoring. Journal of Medical Systems, 42(7), 130. https://doi.org/10.1007/s10916-018-0982-x

Hasselgren, A., Kralevska, K., Gligoroski, D., Pedersen, S. A., & Faxvaag, A. (2020). Blockchain in healthcare and health sciences — A scoping review. International Journal of Medical Informatics, 134, 104040. https://doi.org/10.1016/j.ijmedinf.2019.104040

Hölbl, M., Kompara, M., Kamišalić, A., & Nemec Zlatolas, L. (2018). A systematic review of the use of blockchain in healthcare. Symmetry, 10(10), 470. https://doi.org/10.3390/sym10100470

Houtan, B., Hafid, A. S., & Makrakis, D. (2020). A survey on blockchain-based self-sovereign patient identity in healthcare. IEEE Access, 8, 90478–90494. https://doi.org/10.1109/ACCESS.2020.2994090

Jaiman, V., & Urovi, V. (2020). A consent model for blockchain-based health data sharing platforms. IEEE Access, 8, 143734–143745. https://doi.org/10.1109/ACCESS.2020.3014565

Khalid, U., Asim, M., Baker, T., Hung, P. C. K., Tariq, M. A., & Rafferty, L. (2020). A decentralized lightweight blockchain-based authentication mechanism for IoT systems. Cluster Computing, 23(3), 2067–2087. https://doi.org/10.1007/s10586-020-03058-6

Khan, M. A., & Salah, K. (2018). IoT security: Review, blockchain solutions, and open challenges. Future Generation Computer Systems, 82, 395–411. https://doi.org/10.1016/j.future.2017.11.022

Kuo, T. T., & Zhang, P. (2023). Editorial: Blockchain and distributed ledger technology — enabled architectures for improving healthcare. Frontiers in Blockchain, 6, 1275474. https://doi.org/10.3389/fbloc.2023.1275474

Kuo, T.-T., Kim, H.-E., & Ohno-Machado, L. (2017). Blockchain distributed ledger technologies for biomedical and health care applications. Journal of the American Medical Informatics Association, 24(6), 1211–1220. https://doi.org/10.1093/jamia/ocx068

Kuo, T.-T., Zavaleta Rojas, H., & Ohno-Machado, L. (2019). Comparison of blockchain platforms: A systematic review and healthcare examples. Journal of the American Medical Informatics Association, 26(5), 462–478. https://doi.org/10.1093/jamia/ocy185

Lemieux, V. L. (2016). Trusting records: Is blockchain technology the answer? Records Management Journal, 26(2), 110–139. https://doi.org/10.1108/RMJ-12-2015-0042

Mackey, T. K., Kuo, T.-T., Gummadi, B., Clauson, K. A., Church, G., Grishin, D., Obbad, K., Barkovich, R., & Palombini, M. (2019). "Fit-for-purpose?" — Challenges and opportunities for applications of blockchain technology in the future of healthcare. BMC Medicine, 17(1), 68. https://doi.org/10.1186/s12916-019-1296-7

Madine, M. M., Battah, A. A., Yaqoob, I., Salah, K., Jayaraman, R., Al-Hammadi, Y., Pesic, S., & Ellahham, S. (2020). Blockchain for giving patients control over their medical records. IEEE Access, 8, 193102–193115. https://doi.org/10.1109/ACCESS.2020.3032553

McGhin, T., Choo, K.-K. R., Liu, C. Z., & He, D. (2019). Blockchain in healthcare applications: Research challenges and opportunities. Journal of Network and Computer Applications, 135, 62–75. https://doi.org/10.1016/j.jnca.2019.02.027

Miyachi, K., & Mackey, T. K. (2021). hOCBS: A privacy-preserving blockchain framework for healthcare data leveraging an on-chain and off-chain system design. Information Processing & Management, 58(3), 102535. https://doi.org/10.1016/j.ipm.2021.102535

Ozercan, H. I., Ileri, A. M., Ayday, E., & Alkan, C. (2018). Realizing the potential of blockchain technologies in genomics. Genome Research, 28(9), 1255–1263. https://doi.org/10.1101/gr.207464.116

Park, Y. H., Kim, Y., & Shim, J. (2021). Blockchain-based privacy-preserving system for genomic data management using local differential privacy. Electronics, 10(23), 3019. https://doi.org/10.3390/electronics10233019

Patel, V. (2019). A framework for secure and decentralized sharing of medical imaging data via blockchain consensus. Health Informatics Journal, 25(4), 1398–1411. https://doi.org/10.1177/1460458218769699

Pilares, I. C. A., Azam, S., Akbulut, S., Jonkman, M., & Shanmugam, B. (2022). Addressing the challenges of electronic health records using blockchain and IPFS. Sensors, 22(11), 4032. https://doi.org/10.3390/s22114032

Pournaghi, S. M., Bayat, M., & Farjami, Y. (2020). MedSBA: A novel and secure scheme to share medical data based on blockchain technology and attribute-based encryption. Journal of Ambient Intelligence and Humanized Computing, 11(11), 4613–4641. https://doi.org/10.1007/s12652-020-01710-y

Rahman, M. S., Khalil, I., Atiquzzaman, M., & Yi, X. (2020). Towards privacy preserving AI based composition framework in edge networks using fully homomorphic encryption. Engineering Applications of Artificial Intelligence, 94, 103737. https://doi.org/10.1016/j.engappai.2020.103737

Reyna, A., Martín, C., Chen, J., Soler, E., & Díaz, M. (2018). On blockchain and its integration with IoT: Challenges and opportunities. Future Generation Computer Systems, 88, 173–190. https://doi.org/10.1016/j.future.2018.05.046

Salah, K., Rehman, M. H. U., Nizamuddin, N., & Al-Fuqaha, A. (2019). Blockchain for AI: Review and open research challenges. IEEE Access, 7, 10127–10149. https://doi.org/10.1109/ACCESS.2018.2890507

Shi, S., He, D., Li, L., Kumar, N., Khan, M. K., & Choo, K.-K. R. (2020). Applications of blockchain in ensuring the security and privacy of electronic health record systems: A survey. Computers & Security, 97, 101966. https://doi.org/10.1016/j.cose.2020.101966

Tanwar, S., Parekh, K., & Evans, R. (2020). Blockchain-based electronic healthcare record system for healthcare 4.0 applications. Journal of Information Security and Applications, 50, 102407. https://doi.org/10.1016/j.jisa.2019.102407

Wang, S., Zhang, Y., & Zhang, Y. (2018). A blockchain-based framework for data sharing with fine-grained access control in decentralized storage systems. IEEE Access, 6, 38437–38450. https://doi.org/10.1109/ACCESS.2018.2851611

Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J.-W., da Silva Santos, L. B., Bourne, P. E., Bouwman, J., Brookes, A. J., Clark, T., Crosas, M., Dillo, I., Dumon, O., Edmunds, S., Evelo, C. T., Finkers, R., … Mons, B. (2016). The FAIR Guiding Principles for scientific data management and stewardship. Scientific Data, 3, 160018. https://doi.org/10.1038/sdata.2016.18

Xia, Q., Sifah, E. B., Asamoah, K. O., Gao, J., Du, X., & Guizani, M. (2017). MeDShare: Trust-less medical data sharing among cloud service providers via blockchain. IEEE Access, 5, 14757–14767. https://doi.org/10.1109/ACCESS.2017.2730843

Yli-Huumo, J., Ko, D., Choi, S., Park, S., & Smolander, K. (2016). Where is current research on blockchain technology? — A systematic review. PLOS ONE, 11(10), e0163477. https://doi.org/10.1371/journal.pone.0163477

Yue, X., Wang, H., Jin, D., Li, M., & Jiang, W. (2016). Healthcare data gateways: Found healthcare intelligence on blockchain with novel privacy risk control. Journal of Medical Systems, 40(10), 218. https://doi.org/10.1007/s10916-016-0574-6

Zhang, P., White, J., Schmidt, D. C., Lenz, G., & Rosenbloom, S. T. (2018). FHIRChain: Applying blockchain to securely and scalably share clinical data. Computational and Structural Biotechnology Journal, 16, 267–278. https://doi.org/10.1016/j.csbj.2018.07.004

Zheng, Z., Xie, S., Dai, H.-N., Chen, X., & Wang, H. (2018). Blockchain challenges and opportunities: A survey. International Journal of Web and Grid Services, 14(4), 352–375. https://doi.org/10.1504/IJWGS.2018.095647